| | | Advanced Pathway Painter - 2.01 |
This program visualizes pathways. The user can display any kind of quantitative data from gene and protein experiments directly within the pathways (colours represent the value). Automatic pathway update from KEGG, BioCarta and GenMAPP.
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| More on Gene |
|  | | This software allows you to create family trees (genealogical trees). Gene Tree provides a modern and user friendly interface that will allow you to create, rename or delete trees and add records (Persons) in a tree, very easy. Can accept unlimited image files associated with a person which you can edit in real time. | Size: 1.7 MB License: Shareware Price: $34.95
Keywords: Family - Genealogic - Genealogical - Genealogy | 
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| | | LiveGMS is a PHP/MySQL driven gene editor for the game Creatures 3 / Docking Station. It provides a platform independent online editor with most features other binary genetics editors have. | | Size: 1.8 MB License: Freeware |
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| | | The BGSSJ allows for easy and interactive querying using different gene identifiers (GenBank ID, UniGene, SwissProt, gene symbol), generates a summary page with listings of the frequencies of Gene Ontology annotations for each functional category (cluste | | Size: 1.0 MB License: Freeware |
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| | | Conrad is both a high performance Conditional Random Field engine which can be applied to a variety of machine learning problems and a specific set of models for gene prediction using semi-Markov CRFs. | | Size: 12.7 MB License: Freeware |
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| | | Disease Gene Profiler (DGP) comprises of a set of (bioinformatics) tools that can be used to identify the genes underlying susceptibility to common multifactorial diseases (such as diabetes, asthma and cancer) using freely available datasources. | | Size: 113.6 KB License: Freeware |
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| | | Perl Entrez Gene Parser project provides Perl parsers for NCBI's Entrez Gene based on regular expression, Parse::RecDescent, Parse::Yapp and Perl-byacc. Some can parse human genome annotations in minutes. Documentation and user guides are provided. | | Size: 35.3 KB License: Freeware |
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| | | This is C++ application code that implements Gene Expression Programming, or GEP - a form of genetic algorithm. | | Size: 13.1 KB License: Freeware |
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| | | A gene and protein homology database toolset that uses existing data from ensembl and entrezgene online databases. | | Size: 11.3 MB License: Freeware |
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| | | The home of the Gene Ontology project on SourceForge, including ontology requests, software downloads, bug trackers, and much, much more. | | Size: 44.5 MB License: Freeware |
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| | | Gene-Environment iNteraction Simulator 2 (GENS2) simulates interactions among two genetic and one environmental factor and also allows for epistatic interactions. GENS2 is based on data with realistic patterns of linkage disequilibrium, and imposes no limitations either on the number of individuals to be simulated or on number of non-predisposing genetic/environmental factors to be considered. The GENS2 tool is able to simulate gene-environment and gene-gene interactions. To make the... | | Size: 60.9 MB License: Freeware |
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| | | GeneX is an gene expression database system with an integrated toolset thatenables researchers to store, analyze, and communicate their data. | | Size: 2.5 MB License: Freeware |
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| | | GEOSS: Gene Expression Open Source System (used to be called Genex Va)GEOSS is a secure, multiuser, gene expression database and analysis package. GEOSS is distinguished by a well developed web based user interface, and analysis/reporting. | | Size: 4.7 MB License: Freeware |
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|  | | The Gene Ontology Annotative Listing (GOAL) is an open-source PHP application for assembling and visualizing Biological Sequences based on their corresponding hierarchal Gene Ontology structure, described by the gene ontology consortium. | | Size: 14.0 KB License: Freeware |
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| | | GRaPe - a platform-independent software tool for building integrative gene-reaction-protein (GRP) networks. It generates the kinetic equations for each reaction and outputs a SBML document. It also implements two methods for parameter estimation. | | Size: 3.6 MB License: Freeware |
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| | | HomGL is a web-based tool for comparing gene lists obtained e.g. bymicroarray studies. Unigene, Locus Link & Homology databases are usedto compare gene lists with different accession numbers and between differentorganisms. | | Size: 24.5 KB License: Freeware |
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| | | The SPELL gene expression explorer searches multiple datasets for related gene expression patterns. Hibbs MA, et al. Exploring the functional landscape of gene expression: Directed search of large microarray compendia. Bioinformatics, 2007. | | Size: 1.5 MB License: Freeware |
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|  | | SpliceGrapher predicts alternative splicing patterns and produces splice graphs that capture in a single structure the ways a gene's exons may be assembled. It enhances gene models using evidence from next-generation sequencing and EST alignments. FEATURES: A· splice graph prediction A· splice junction prediction using support-vector machines A· splice graph visualization | Size: 645.0 KB License: Freeware
Keywords: Gene Exon - Predict - Predict Splice Graph - Predictor - Splice Graph - Splice Graph Predictor |
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| | | MeV or Multiple Experiment Viewer is a Java tool to help you with microarray gene expression data analysis. MeV supports 5 input formats, and provides an intuitive graphical interface for clustering, classification, statistical analysis and theme discovery. | Size: 64.1 MB License: Freeware
Keywords: Analysis - Analyze - Analyze Data - Analyzer - Data Analyzer - Microarray Gene Analysis |
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|  | | Mocha allows you to generate shifting sound responsive images. Starting with a simple mathematical expression called a bene, a mix of gene and bean, pronounced "bean", you can investigate the visual impact of variable time, the inflence of sounds, colors, and seed images to the images created by Mocha. Evolve your visualizations purposfully, exploring th effects of various changes to the bene.. Watch as images evolve organically, both by your explicit changes or on your behalf by Mocha in... | Size: 389.0 KB License: Freeware
Keywords: Expression - Graphics - Math - Sound - Visualization - Winamp |
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|  | | Genom 2005 is a feature rich and user friendly application for analysing array-experiments (e.g. from provider Affymetrix). It includes normalisation of raw data, additional gene information official gene names, location, function prediction, sequences, database references (GeneOntology, InterPro, SwissPROT ,ENSEMBL, GeneBank...), multiple analysis methods (cluster, Support-Vector-Machine, statistical methods), automatic pathway mapping (BioCarta, GenMAPP...), an integrated pathway editor... | Size: 93.3 MB License: Shareware Price: $1049
Keywords: Affymetrix - Analyse - Biocarta - Biology - Bioscience - Dna - Function Prediction - Genmapp - Kegg - Microarray |
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| | | This project concerns the development of a strategy to guide and provide a rational roadmap of experimentations to carry to fully characterize a pathway using high-throughput gene expression measurement techniques. | | Size: 14.6 MB License: Freeware |
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| | | LocalMotif is a bioinformatics tool for discovering nucleotide motifs in a set of gene regulatory sequences. It takes into account the positional distribution of the motifs relative to a biological landmark. Look out for an updated version in May. | | Size: 374.5 KB License: Freeware |
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| | | Maple Tree is a Java based visualization tool used by researchers in the biological sciences to visualize and graphically browse the results of analyses of gene expression data collected from microarray experiments. | | Size: 1.2 MB License: Freeware |
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| | | Manatee is a web-based gene evaluation and genome annotation tool. Manatee can store and view annotation for prokaryotic and eukaryotic genomes. | | Size: 2.0 MB License: Freeware |
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| | | Microarray Gene Expression Database Group and OMG Gene Expression Standard (MAGE) | | Size: 761.9 KB License: Freeware |
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| | | Moara is a biological text mining tool and consists of a Java library and some auxiliary MySQL databases for gene/protein training and extraction of mentions and its further normalization and disambiguation. | | Size: 25.6 MB License: Freeware |
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| | | AnnaF is an automatic gene annotation framework, that is used to do some automatic annotation for C. higginsianum. It was also tested on F. graminearum and should work well for fungi in general. AnnaF was build upon the pipeline framework Anna. | | Size: 643.0 KB License: Freeware |
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| | | The Gene Expression Programming Framework in Java.It separates the process of evolution from the process of interpretation of the chromosome, allowing the use of various schemes in the chromosome. | | Size: 2.1 MB License: Freeware |
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| For searches similar to gene see "Related Downloads" under the categories listing. |
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