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LCMStats - An R package - 1.0

An R package for detailed inspection and analysis of LCMS data.

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Current Version: 1.0
License: Freeware
Downloads: 10

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R Package for the Analysis of DCE-MRI 4.0.45Data Added: September 06, 2012   
A collection of code, bundled into a single R package, to perform several aspects of data management, image pre-processing, data analysis and statistical inference related to the quantitative analysis of dynamic contrast-enhanced MRI (DCE-MRI).
Size: 4.2 MB License: Freeware 

R package kOO 1.0Data Added: June 06, 2013   
R package kOO. .
The R package to be built aims at implementing what I did in a few scripts for the preparation of the papers I published in CaGEO and TGIS (see below). Basically this is related to the computation of the distribution of k co-occurrences of spatial events (generalising the contiguity distributions - 2 co-occurrences at distance 0) to derive spatial clustering statistics (mainly using the Shannon entropy, then called the k-spatial entropy) and methods linked to this: SOOk, SelSOOk (see caGEO...
Size: License: Freeware 

R package for spatial data classes 0.1.2Data Added: July 25, 2013   
An R-package for dealing with spatial data in S (R or S-PLUS); this package should provide classes and methods for spatial data (points, lines, polygons, grids) that can be relied upon by other packages that use spatial data. Check out module sp. GNU General Public License version 2.0 (GPLv2)
Size: 2.3 KB License: Freeware 

R Package Creator 1.0Data Added: June 09, 2013   
Creating an R package under Windows is quite difficult to do. The R Package Creator helps you to create a package without the typical problems you will encounter when you try to do it from scratch. GNU General Public License (GPL)
Size: License: Freeware 

timetools (for r-cran) 1.1.2Data Added: September 30, 2012   
A R package to manipulate irregular time series such as subtime series, series based on time intervals, etc. This package uses only POSIXt* format. Main things defined in this package are the classes POSIXcti, POSIXctp, TimeIntervalDataFrame, TimeInstantDataFrame, SubtimeDataFrame, methods to switch from one class to another, and the changeSupport method for TimeIntervalDataFrame. Available on CRAN (http://cran.r-project.org/)
Size: 39.3 KB License: Freeware 

R world mapping and visualisation 1.0Data Added: June 11, 2013   
An R package for visualising global scale data by easy import & display of country level & gridded data. Rworldmap will also provide access to existing datasets from earth to social sciences and facilitate their combination to provide insights for policy GNU General Public License (GPL)
Size: License: Freeware 

R package for simple hydrological models 1.0Data Added: June 04, 2013   
A set of R functions (www.r-project.org) for simple hydrological models, based on linear and non-linear storages, MC simulation and multi-objective evaluation. The code provided here is aimed to be transformed into a proper R package at some point. GNU General Public License (GPL)
Size: License: Freeware 

metRology 0.9.12Data Added: May 29, 2012   
An R package for metrology. metRology provides classes and calculation and plotting functions for metrology applications, including measurement uncertainty estimation and (eventually) inter-laboratory metrology comparison studies.
Size: 97.9 KB License: Freeware 

clusterCons 1.0Data Added: August 22, 2012   
An R package implementation of a consensus clustering methodology. This package allows users to perform re-sampling statistics based clustering using multiple clustering algorithms to assess the robustness of both clusters and members of clusters.
Size: 166.5 KB License: Freeware 

Dinucleotide signatures 1.0Data Added: May 14, 2012   
This project contains a set of files (Perl, Java, and an R package) used to perform analysis of oligonucleotide signatures in metagenomes and genomes.
Size: 7.1 KB License: Freeware 

DuffyRNAseq 1.2.0Data Added: May 07, 2012   
DuffyRNAseq is an R package that implements an analysis pipeline for processing RNA-seq data from Illumina NextGen sequencers, to measure gene transcription and differential expression.
Size: 216.5 MB License: Freeware 

FASeg 2.0Data Added: June 04, 2012   
An R package that performs forward-backward fragment assembling segmentation. Reference: BMC Bioinformatics. 2007 May 3;8:145.
Size: 13.5 MB License: Freeware 

RmiR 1.0.4Data Added: June 20, 2012   
RmiR is an R package for the analysis of microRNA and gene expression microarrays.The package is designed to coupling microRNA and gene expression data, using different databases, like TargetScan, mirBase, picTar,TarBase and others...
Size: 285.6 KB License: Freeware 

SAFEGUI rcData Added: May 12, 2012   
SAFEGUI is a graphical interface to the safe R package which performs resampling based categorical significance testing for gene expression data.
Size: 3.6 MB License: Freeware 

Vennerable Added: July 01, 2012   
An R package for the display of Venn diagrams
Size: 998.8 KB License: Freeware 

pgfSweave 1.0Data Added: April 25, 2013   
An R package for use with Sweave that allows for the speedy compilation of high quality graphics by using TeX package pgf and the utility eps2pgf. For recent builds please see http://rforge.net/pgfSweave/. GNU General Public License (GPL)
Size: License: Freeware 

hSDM 1.1Data Added: April 15, 2013   
hSDM is an R package for hierarchical species distribution models. Such models allows interpreting the observations (occurrence and abundance of a species) as a result of several hierarchical processes including ecological processes (habitat suitability, spatial dependence and anthropogenic disturbance) and observation processes (species detectability). Hierarchical species distribution models are essential for accurately characterizing the environmental response of species, predicting their...
Size: 201.6 KB License: Freeware 

clusterCons 1.0Data Added: March 06, 2013   
An R package implementation of a consensus clustering methodology. This package allows users to perform re-sampling statistics based clustering using multiple clustering algorithms to assess the robustness of both clusters and members of clusters. clustering R-package classification re-sampling statistics GNU General Public License version 2.0 (GPLv2)
Size: 166.5 KB License: Freeware 

phcfM 1.1Data Added: April 10, 2013   
phcfM. .
phcfM is an R package for modelling anthropogenic deforestation. It was named after the REDD+ pilot-project 'programme holistique de conservation des forA?ts A Madagascar'. phcfM includes two main functions: (i) demography(), to model the population growth with time in a hierarchical Bayesian framework using population census data and Gaussian linear mixed models and (ii) deforestation(), to model the deforestation process in a hierarchical Bayesian framework using land-cover change...
Size: 323.3 KB License: Freeware 

treerank 1.0Data Added: April 04, 2013   
The TreeRank project is a R package implementing a Machine Learning algorithm to build tree-based ranking rules from data with binary labels, based on ROC optimization.
Size: License: Freeware 

AFLP 1.0Data Added: March 05, 2013   
An R package to normalise, classify and analyses raw AFLP data. GNU General Public License version 3.0 (GPLv3)
Size: License: Freeware 

RCFPD 1.0.1Data Added: April 16, 2013   
An R package for distribution of data analysis functionality used by the Proteomics Core at Weill Cornell Medical College in Qatar. GNU General Public License version 3.0 (GPLv3)
Size: 783.2 KB License: Freeware 

Multicriteria Clustering 1.0Data Added: June 25, 2013   
An R package for Multi-criteria clustering analysis. MIT License
Size: License: Freeware 

Phonmisc 1.0Data Added: July 02, 2013   
R package for phonetic research. GNU General Public License (GPL)
Size: License: Freeware 

eyemeasures 1.0Data Added: February 13, 2013   
em is an R package for calculating measures used in psycholinguistic eyetracking reasearch. GNU General Public License (GPL)
Size: License: Freeware 

researchreuse 1.0Data Added: June 12, 2013   
researchreuse is a python library and R package for identifying factors associated with a researcher's decision to share their research outputs (raw datasets, source code, etc). MIT License
Size: License: Freeware 

ichthyoanalysis 0.1.5Data Added: April 04, 2013   
R package for analysis of ichthyoplanckton data. Please visit the ichthyoanalysis WIKI for more information and for collaboration Estimate fish spawning area, egg production and egg mortality GNU General Public License (GPL)
Size: 386.1 KB License: Freeware 

SPA - SNP based pathway analysis 1.0Data Added: May 04, 2013   
SPA is an R package which can identify disease or phenotype related pathways. Input rs# and GWAS test p-values, you can get the related pathways. GNU Library or Lesser General Public License version 3.0 (LGPLv3)
Size: 15.7 MB License: Freeware 

R grade package 1.0Data Added: May 30, 2013   
grade is a package for 'R' (www.r-project.org/). grade provides tools to comparea teacher's answer to a student's answer, subject to appropriate constraints. GNU General Public License (GPL)
Size: License: Freeware 

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